1993 days ago
1992 days ago
Quick tour of Genetic Algorithms !
...package GA provides a collection of general purpose functions for optimization using genetic algorithms. The package includes a flexible set of tools for implementing gen...1987 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...p) for every region in the genome. The default is to use only clipped, discordant, unmapped and indel reads, although this can be customized to any set of reads at the command line...1982 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
UpSetR generates static UpSet plots. The UpSet technique visualizes set intersections in a...ditional summary statistics derived from subset or element attributes. For f...website. You can also check out the UpSetR shiny app. Here is the...1975 days ago
nQuire: A statistical framework for ploidy estimation using NGS short-read data
nQuire implements a set of commands to estimate ploidy level of individuals from species, where recent polyploidization occurred and intraspecific ploidy variation is observed....1973 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
...Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that invokes an annotation pipeline (PhATE) across a user-specified set of phage genomes. This tool i...1868 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...its own configuration of the ‘Information Editor’. History tracking with undo/redo functions is available. Users are able to directly set an annotation to a specific s...1852 days ago
VESPA: Very large-scale Evolutionary and Selective Pressure Analyses
find the resources we provide here useful in getting you set up to analyse and interpret your data. To reference VESPA: https://peerj.com/preprints/1895/ Documentation is now hosted on ReadTheDocs1831 days ago
MFannot : a program for the annotation of mitochondrial and plastid genomes
...n of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diverse, external independ...1765 days ago