Public Databases for Bioinformatics !
...36LHE.bigWig, https://www.encodeproject.org/files/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/genco...1188 days ago
3057 days ago
2888 days ago
2764 days ago
2746 days ago
2675 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contigua...2599 days ago
2582 days ago
Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...uted and re-executed separately or in unison on a wide variety of architectures. https://jgi.doe.gov/data-and-tools/meraculous/ https://arxiv.org/ftp/arxiv/papers/1703/1703.09852....2377 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...898 days ago