Results for "HTS"
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...a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especia...2954 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an increasingly popular...
2842 days ago
- High throughput sequencing (HTS) technologies are being applied to a wide range of importa...esses the specific strengths and weaknesses of alternative HTS technologies, the computational resources needed for HTS, and how to analyze non-model...
2614 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...ion-maximization procedure and an unconstrained binary quadratic programming approximation of the original problem. We compared GRASS with existing HTS scaffolders using Illumina pa...2566 days ago
- CroCo is a program to detect cross contamination events in assembled transcriptomes using sequencing reads to determine the true origin of every transcripts.Such cros...
1971 days ago
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization
...tochondrial Scaffolds), annotation and visualization, that can generate mitogenome assembly together with annotation and visualization results from HTS raw reads. https://academic....913 days ago
- To convert a VCF into a MAF, each variant must be mapped to only one of all possible gene transcripts/isoforms that it might affect. But even within a single isoform,...
897 days ago
CrossMap: program for genome coordinates conversion between different assemblies
CrossMap is a program for genome coordinates conversion between different assemblies (such as hg18 (NCBI36) <=> hg19 (GRCh37)). It supp...857 days ago
