List of motif discovery tools !
...rces through the Distributed Annotation System Annotate protein using this integrated annotation resource. InterProScan -- protein domains identifier Identify protein family (and...2047 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
...o start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box by selecting the type of identifier and pasting identifiers (one per line) or by u...2342 days ago
KEGG Mapper – Reconstruct Pathway
...ene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene list contains the user-defined gene identifier followed by, if any, the assi...2025 days ago
List of In-silico Binding Site Prediction Tools
...ding site. SitesBase: http://www.modelling.leeds.ac.uk/sb/ is a database of known ligand binding sites within the PDB which is navigable by PDB identifier or ligand 3 letter code e.g....3798 days ago
Apps for Busy Bioinformatics Researchers !!!
...ou. After uploading your 23andMe raw data onto your iPhone via iTunes, GeneGroove will analyze your genome informations and generate a unique identifier key. This key, called the GeN...3595 days ago
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Python script to parse a FASTQ file !
#Python script to parse a FASTQ file and extract basic information such as the sequence identifier, sequence, and quality scores #pip install biopython from Bio import SeqIO def...18 days ago
Synteny and Rearrangement Identifier (SyRI)
SyRI is a comprehensive tool for predicting genomic differences between related genomes using whole-genome assemblies (WGA). The assemblies are aligned using whole-genome alignment tools, and these alignments are then used as input to SyRI. SyRI identifies syntenic path (longest set of co-linear ...Tags: Synteny, Rearrangement, Identifier, SyRI, Genome, Comparative, Genomics
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Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
...file If you have a large number of sequences that you want to extract, then you most likely have the sequence identifiers in a separate file. Assuming that you have one sequence identifier per line in the file ids.file...1964 days ago