Results for "PacBio read correction"
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Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3955 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop tut...bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP cal...p://www.biomedcentral.com/1471-2105/14/S7/S11 DDBJ read annot...3533 days ago
- "By removing the time-consuming step of read mapping, the authors reported, Sailfish able to provide quantification estimates 20–30 times faster than current methods without loss of accuracy." Tool link: http://www.cs.cmu.edu/~ckingsf/software/sailfish/
3708 days ago
Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search Algorithms)NGS Genom...3649 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS"...3619 days ago
- You are requested to please bookmark collection of bioinf...ysis and control with few of process for reporting reads quality statistical details, trimming, filtering, and error correction. Please bookmarks them for th...
3279 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-g...dle Oxford Nanopore MinION 1d and 2d reads with very high sensitivit...vement over the state-of-the-art for PacBio read mappers. GraphMap was also d...iles, including: Illumina, PacBio&nbs...3270 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
Second generation sequencing has revolutionized genomic studies. However, most...ated DNA elements that are longer than the read lengths achievable with typic...f sequencers offering substantially longer reads is emerging, notably the Pacific Biosciences (PacBio) RS...3270 days ago
Resolving the complexity of the human genome using single-molecule sequencing
The human genome is arguably the most complete mammalian reference assembly yet more than 160 euchromatic gaps re...itive DNA that can now be largely resolved with the application of this longer-read seque...3266 days ago
- Pilon is a software tool which can be used to: Automatically improve draft assemblies Find varia...ut a FASTA file of the genome along with one or more BAM files of reads aligned to the input FASTA file. Pilon uses read align...
3054 days ago
