Results for "Pangenome"
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pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph...the interpretation, visualization, and reuse of pangenome variation graphs....1383 days ago
odgi: optimized dynamic genome/graph implementation
...se of such graphs in bioinformatic analyses. Careful encoding of graph entities allows odgi to efficiently compute and transform pangenomes with minimal overheads....877 days ago
Collection of Graph Visualization tools !
Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences f...520 days ago
- ...te used to create and manipulate prokaryotic pangenomes from a set of either genomic...mes. It has the specificity to partition the pangenome using a statistical approach...onmental studies and letting users study the pangenome of uncultivable species. A c...
148 days ago
Panacus : A Counting Tool for Pangenome Graphs
...nk (L) points from the end of one segment (S) to the start of another. panacus supports the following calculations: coverage histogram pangenome growth statistics path-/grou...14 days ago
