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FSA: Fast Statistical Alignment
...UI, MAD (Multiple Alignment Display), can display the intermediate alignments produced by FSA, where each character is colored according to the probability that it is correctly aligned...2672 days ago
LIBSVM -- A Library for Support Vector Machines
...features of LIBSVM include Different SVM formulations Efficient multi-class classification Cross validation for model selection Probability estimates Various kernels (i...2495 days ago
LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS)
LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including sou...2210 days ago
Hercules: a profile HMM-based hybrid error correction algorithm for long reads
...Hidden Markov Model with respect to the underlying platformtextquoterights error profile. The algorithm learns a posterior transition/emission probability distribution for each long re...2111 days ago
BASE: a practical de novo assembler for large genomes using long NGS reads
...embler called BASE. It enhances the classic seed-extension approach by indexing the reads efficiently to generate adaptive seeds that have high probability to appear uniquely in the gen...2052 days ago