Results for "Rearrangements"
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...d protein sequences, predicting genes, finding regulatory motifs, analyzing gene expression, constructing evolutionary trees, analyzing genome rearrangements, and identifying proteins. P...3995 days ago
- This software is designed to identify both simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper par...
3038 days ago
- ...requency. ALE pinpoints synthetic errors in both single and metagenomic assemblies, including single-base errors, insertions/deletions, genome rearrangements and chimeric assemblies prese...
2982 days ago
Smash: An alignment-free method to find and visualise rearrangements between pairs of DNA sequences
Smash is a completely alignment-free method/tool to find and visualise genomic rearrangements. The detection is based on conditional exclusive compression, namely using a FCM (Markov...2982 days ago
Comparative genomics educational material and papers bookmarks
...that both lineages evolved with an average rate of ~2.1 large-scale rearrangements per million years after the d...rtiodactyl ancestor ~60 Myr ago2. This rate compares to ~1.9 rearrangements per million years within the...2784 days ago
- ...on that variants are reported from traditional cytogenetic coordinates down to the actual base pair positions. Furthermore, multiple rearrangements in a single area of the genom...
2823 days ago
- ...pyScaf works very well if divergence between reference genome and assembled contigs is below 20% at nucleotide level. pyScaf deals with large rearrangements ie. deletions, insertion, inv...
2744 days ago
- ...de level. The former "coarse-grained" alignment can explore genomic rearrangements and reduce the regions to be...the first stage. The output of Cgaln is 'glocal' in the sense that rearrangements are taken into consideration...
2680 days ago
- ...arizing, parsing and visualizing the genome wide sequence comparison results derived from voluminous BLAST textual output, so as to locate the rearrangements, insertions or deletions of g...
2685 days ago
Mulan: MUltiple sequence Local AligNment and conservation visualization tool
...r more) sequence alignments with an efficient and rapid "full local" alignment strategy that ensures a recapitulation of evolutionary sequence rearrangements (such as inversions and reshu...2532 days ago
