List of motif discovery tools !
...on in a distributed Web Services Environment Protein function prediction and annotation in an integrated environment powered by web service. ANCHOR -- Prediction of Protein Bind...2132 days ago
Ancient whole genome duplication (WGD) detection tools !
...the genome is good, then wgd syncollinearity analysis can be used . It can help us find the collinearity block in the genome and the corresponding anchor point wgd syn --feature ge...1294 days ago
2912 days ago
FSA: Fast Statistical Alignment
...r ten times faster than a direct approach with little loss of accuracy. FSA can quickly align very long sequences using the "anchor annealing" technique for resolving anchors and projecting them with tra...2784 days ago
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short...2824 days ago
List of In-silico Binding Site Prediction Tools
...http://metapocket.eml.org. PocketQuery: http://pocketquery.csb.pitt.edu/ is a web service for interactively exploring not only hot spot and anchor residues, but hot regions, de...3882 days ago
Tags: AnchorWave, Anchored, Wavefront, Alignment, collinear, regions, conserved, anchors, CDS, exon, currently, breaks, collinear, regions, fragments, anchor, inter-anchor, intervals
940 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...: '-a gotoh -w normal -M 5 -X 4 -G 8 -E 6' overlap - Equivalent to: '-a anchor -w normal --overlapper --eval...ist. alignment. sggotoh - Gotoh alignment with affine gaps. Semiglobal. anchor - anchored alignment with end...2430 days ago