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Linux command line exercises for NGS data processing
...to the operating system. Most Linux systems utilize Bourne Again SHell (bash), but there are several addit...are using, type [uzi@quince-srv2 ~/linuxTutorial]$ echo $SHELL /bin/bash...2889 days ago
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Perlbrew: admin-free perl installation management tool.
...te this line into your terminal: \curl -L https://install.perlbrew.pl | bash Or, if your system does no...l but something else: # Linux \wget -O - https://install.perlbrew.pl | bash # FreeBSD \fetch -o- http...2504 days ago
PilonGrid: parallel wrapper around the Pilon framework
The distribution is a parallel wrapper around the Pilon framework The pipeline is composed of bash scripts, an example mapping.fofn which shows how to input your fastq files (you give paths to the R1 file), and how to launch the pipeline.1985 days ago
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