Results for "expressed"
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A Brief Bioinformatics Tutorial
...on. In the Function part, you will be introduced to you 3 useful servers to investigate the function of a protein. i.e. finding interactors, co-expressed genes, see a phylogenetic pro...3672 days ago
PASA: Gene Structure Annotation and Analysis
PASA, acronym for Program to Assemble Spliced Alignments, is a eukaryotic genome annotation tool that exploits spliced alignments of expressed transcript sequences to automatically mod...2357 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
...op is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts. Scallop achieves...2225 days ago
EvidentialGene: tr2aacds, mRNA Transcript Assembly Software
...s. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly se...2225 days ago
SeqMonk:A tool to visualise and analyse high throughput mapped sequence data
...of mapped sequence data. It was written for use with mapped next generation sequence data but can in theory be used for any dataset which can be expressed as a series of genomic positi...2099 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...by using ChIP-seq experiments. Because of its activating role, if we overlap the genes that are bound by H3K4me3 with the genes that are highly expressed, we should expect a positive...1991 days ago
- ...e too low in all samples, thus hampering our procedure (which relies on differential expression) to confidently assign it to any category. over expressed: expression levels are very h...
1980 days ago
GEO2R: compare two or more groups of Samples
GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.1267 days ago
StringTie Transcript assembly and quantification for RNA-Seq
...er transcript assemblers, but also alignments of longer sequences that have been assembled from those reads. In order to identify differentially expressed genes between experiments, St...1462 days ago
RNA-Seq differential expression work flow using DESeq2
One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.1021 days ago
