Public Databases for Bioinformatics !
...36LHE.bigWig, https://www.encodeproject.org/files/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/genco...1154 days ago
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A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contigua...2565 days ago
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Meraculous: Haplotype-sensitive Assembly of Highly Heterozygous genomes.
...uted and re-executed separately or in unison on a wide variety of architectures. https://jgi.doe.gov/data-and-tools/meraculous/ https://arxiv.org/ftp/arxiv/papers/1703/1703.09852....2343 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA), a...864 days ago