Results for "synonymous"
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Ancient whole genome duplication (WGD) detection tools !
...is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is also a Ka...1192 days ago
Bookmarks
- %MM calculates whether a given gene sequence encodes amino acids using the most common codons possible, the least common codons possible, or (most typically) some combina...
2210 days ago
DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms
...assembler RAD-seq software). DnaSP can estimate several measures of DNA sequence variation within and between populations in noncoding, synonymous or nonsynonymous sites, or in various sorts of...1293 days ago
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Bio++ : C Language libraries for your biological need
...s for codominant and sequence data.Estimation of Wright F-statistics and pairwise genetic distance on codominant markers.Statistics on synonymous and non synonymous sites for coding sequencesVar...3984 days ago
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Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...$aln, -method => 'Jukes-Cantor'); print $jcmatrix->print_matrix; ## and for measurements of synonymous /nonsynonymous substitutions ## my $in...2686 days ago
Tags
- %MM calculates whether a given gene sequence encodes amino acids using the most common codons possible, the least common codons possible, or (most typically) some combination of these extremes. See our PLoS ONE paper for more details on how the %MinMax algorithm works. %MinMax results are ave...
Tags: %MinMax, tool, calculating, synonymous, codon, usage, impact, protein, folding
2210 days ago
