Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your macOS system. Install Homebrew if you haven't already...459 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...rest. Obtain the genome sequences: Download the genome sequences of the selected species from a public database, such as NCBI or Ensembl. Gene annotation: Annotate the genes in each g...460 days ago
Comment on "Basic command-line to run BLAST"
...rall, BLAST is a powerful tool for searching sequence databases and can be used for many different types of analyses, including gene annotation, functional annotation, and comparative genomics....460 days ago
Comment on "List of gene ontology software and tools"
GeneSCF serves as command line tool for clustering list of genes based on functional annotation (Geneontology, KEGG, REACTOME and NCG). This tool requires gene list in the form of Entrez Gene IDs or Official gene symbols as a input. http://genescf.kandurilab.org/1529 days ago
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Comment on "Running Trinity on RNA-seq !"
...ipts using Trinotate. If your organism has an assembled genome, consider using the Trinity transcriptome assemblies for gene structure annotation using PASA....2159 days ago
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Comment on "Tools to detect synteny blocks regions among multiple genomes"
For bacterial synteny -- MicroScope: Microbial Genome Annotation & Analysis Platform @ https://www.genoscope.cns.fr/agc/microscope/home/index.php2764 days ago
Comment on "List of gene ontology software and tools"
http://bioinformaticsonline.com/blog/view/28037/tool-gene-set-clustering-based-on-functional-annotation-genescf2908 days ago