Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Na...474 days ago
Comment on "Sibelia: A comparative genomics tool"
.... Run "Circos" in "circos" directory For example of such diagrams (generated from "Helicobacter_pylori.fas...non-branching paths are collapsed into a single edge. Blue edges are generated from positive strand and red...1338 days ago
Comment on "Installing Bio::SCF perl module"
jit@jit-HP-Pro-3335-MT:~/Downloads$ sudo cpan -T install Bio::SCP[sudo] password for jit: Loading internal null logger. Install Log::Log4perl for logging messagesReading '/home/jit/.cpan/Metadata' Database was generated on Fri, 13 Mar 2020 03:55:17 GMTinstall is up to date (0.01).1495 days ago
Comment on "Setting up autoConTAMPR !"
...t/.cpan/sources/modules/02packages.details.txt.gz' Database was generated on Sun, 24 May 2020 12:41:03...stribution installedReading '/root/.cpan/Metadata' Database was generated on Sun, 24 May 2020 12:41:03...1495 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate variant calls...1613 days ago
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Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...th to the index of the reference sequence. If not specified, index is generated in the same folder as the ref...tension. For non-parsimonious mode, secondary index .gmidxsec is also generated. -d, --reads STR Path to the...2345 days ago
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