Comment on "Coronavirus Resources !"
The US government SARS-CoV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of In...1014 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the number of samples is not known...1097 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper-2012 ] lumpy – lumpy: a general probabilistic...1196 days ago
Comment on "URMAP, an ultra-fast read mapper"
map command Maps unpaired reads to a reference genome. The reference genome is stored as a UFI file created by the make_ufi command. The original FASTA file for the ref...1337 days ago
1574 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate vari...1613 days ago
2191 days ago
Comment on "Structural variation: the hidden genomic treasure"
Structural variant detection and association testing https://github.com/zeeev/wham2681 days ago
Comment on "Commercial and public next-gen-seq (NGS) software"
dDocent: a RADseq, variant-calling pipeline designed for population genomics of non-model organisms https://peerj.com/articles/431/3601 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
A survey of tools for variant analysis of next-generation genome sequencing data http://bib.oxfordjournals.org/content/early/2013/01/21/bib.bbs086.full3865 days ago