kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. I...2306 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...een two (or three) sequence files or hashes. sect: SEquence Coverage estimator Tool. Estimates the coverage...ge along with GC% for each sequence in the assembly.SEquence Coverage estimator Tool. filter: Filtering tool...2120 days ago
Genome Assembly Tools and Software - PART2 !!
...that provide non-paired data, or contigs that were output from a prior run of PRICE or any other ALE 20130717 – Assembly Likelihood EstimatorALE is a probabalistic fr...2824 days ago
Genome Assembly Tools and Software - PART1 !!
...state-of-the-art assemblers and the hybrid assemblies merged by existing tools Cufflinks 2.2.1 – Transcript Assembler & Abundance Estimator for RNA-Seq Cufflinks asse...2824 days ago
Run Pango on your multifasta file !
...el 11/30/2021, 13:10:05 /home/jnarayan/anaconda3/envs/pangolin/lib/python3.8/site-packages/sklearn/base.py:324: UserWarning: Trying to unpickle estimator DecisionTreeClassifier from v...1026 days ago