470 days ago
Comment on "Calling variants in non-diploid systems"
...l (or bacterial or viral) genomes, but we do not know exactly how many. Thus we will use the --pooled-continuous option of FreeBayes to generate frequency-based variant calls...1099 days ago
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Comment on "Sibelia: A comparative genomics tool"
...------------------ File name = "d3_blocks_diagram.html". "Sibelia" generates an interactive html diagram...ram are written in directory "circos" inside the output directory. To generate "Circos" diagram do followin...1340 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
...rsquo;ll stick to looking at the split output file, called 04.break.broken_assembly.fa. Use this file together with the original assembly to generate a quast report. How does the...1392 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
Benchmark (or "High-confidence") variant calls and regions:We developed an integration pipeline to utilize sequencing data generated by multiple technologies to generate variant calls and regions for use...1615 days ago
Comment on "Estimate Genome Size"
...ount -m 31 -o fastq.counts -C -s 10000000000 -U 500 -t 30 /dev/fd/0 # generate a histogram jellyfish histo fastq.counts_0 > fastq.counts_0.histo # generate a pdf graph of the histogram...1953 days ago
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Comment on "Venn Diagrams on R Studio"
How can I generate a Venn diagram in R? by UCLA is also useful http://www.ats.ucla.edu/stat/r/faq/venn.htm2987 days ago