Comment on "SPAdes hybrid genome assembly"
use SPAdes to assemble the data. SPAdes is a swiss-army knife of genome assembly tools, and by default includes read correction. This takes up lots of...2232 days ago
2233 days ago
Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy r...2233 days ago
Comment on "Basic command-line to run BLAST"
Thanks for this blog ... here is some reference for BOL users urbe@urbo214b[Human_vs_Avaga_protein] wget ftp://ftp.ncbi.nlm.nih.gov/genomes/Homo_sapiens/protein/protei...2302 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive long-read, high error-rate sequence mapperGraphMap Version: v0.5.2Build date: Jun 6 2...2350 days ago
2857 days ago
Comment on "Most Commonly used Awk by Bioinformatician"
Rename the name of multi fasta sequesnces with awk awk '/^>/{print ">chromosome" ++i; next}{print}' < file.fasta3038 days ago
Comment on "Next generation sequencing in R or bioconductor environment"
We generally receive some common question like ... where to find human reference genome? What is reference annotation, how to download it etc. Here are some resources t...3679 days ago
Comment on "Bio++ : C Language libraries for your biological need"
Parse FASTA/FASTQ file with C http://lh3lh3.users.sourceforge.net/parsefastq.shtml3971 days ago