BOL: Results for "Frequent"

Results for "Frequent"

- BioStar@biostar
Protocol for De novo Genome Assembly using Illumina Reads
...rvice - http://www.jcvi.org/cms/research/projects/annotation-service/ Frequent command use for the analysis...re at: https://bioinformaticsonline.com/blog/view/38765/list-of-tools-frequently-used-while-genome-assemblyh...
1228 days ago

- Jit@jit.aber
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularl...
2270 days ago

- Rahul Agarwal@raag
Genomics and sequencing approach for identification of biomarkers to assess the efficacy of TGF-βRI inhibitors (of liver cancer) in vivo
Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. There are multiple signaling pathways responsible for causing cancer amongst which TGF...
3585 days ago

- Jit@jit.aber
Genome Assembly Tools and Software - PART1 !!
...tructing repeats directly from sequence reads. It based on the idea of frequent k-mer assembly. REPdenovo pro...ionalities.1.Assembly. This step performs k-mer counting. Then we find frequent k-mers whose frequencies are...
2709 days ago
- Jit@jit.aber
Frequent Paired-end reads (PE 2x100) mapping command lines
bowtie2 -x hs37m -X 650 -q -1 r1.fq -2 r2.fq -S r12.bowtie2.sam bwa aln hs37m.fa r1.fq > r1.sai && bwa aln hs37m.fa r2.fq > r2.sai \ &&...
2206 days ago
+1 more Top-level pages

- Jit@jit.aber
Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"
...ta, alignment, and variant calling. qrqc qrqc. Quickly scans reads and gathers statistics on base and quality frequencies, read length, and frequent sequences. Produces graphical...
2161 days ago
- Jit@jit.aber
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...indow to select a minimizer from. If equal to 1, minimizers will be turned off. [5] --freq-percentile FLT Filer the (1.0 - value) percent of most frequent seeds in the lookup process....
2316 days ago