Most Commonly used Awk by Bioinformatician
...1 in l{print $0"\t"l[$1]}' file2.txt > output.txt count number of occurrence of column 2 (uniq -c): awk '...x,l[x]}' input.txt apply "uniq" on column 2, only printing the first occurrence (uniq): awk '!($2 in l){prin...3955 days ago
Commercial and public next-gen-seq (NGS) software
...ls by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer words with high occurrence numbers. More tuned for ABI S...3562 days ago
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Perl script to count occurrence of a character !
#!/usr/bin/env perl # -*- coding: utf-8 -*- #!/usr/bin/perl use strict; use warnings; my %count_of; while ( ) { my @val = split "\t", $_; #my ( $w...1943 days ago
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