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3787 days ago
List of tools frequently used while genome assembly
...Pilon (v. 1.18) Nanopolish (v. 0.8.3) I have used the following tools to assess genome assembly characteristics ANI.pl (https://github.com/chjp/ANI) CheckM (v. 1.0.7) Pro...1958 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free c...le-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucl...red between two microbial genomes. FastANI supports pairwise comparison...curacy is on par with BLAST-based ANI solver and it achieves t...2151 days ago
ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Un...nt to compare bacterial genomes and calculate their average nucleotide identity (ANI), you could download and run...2028 days ago
Cleaner BLAST Databases for More Accurate Results
...ss-species screening (FCS-GX) detects contamination from foreign organisms in genomes and other seque...he genome cross-species aligner (GX) Average Nucleotide Identity (ANI) evaluates the taxonomic...41 days ago
Script to rapid genome clustering based on pairwise ANI
...db -outfmt '6 std qlen slen' -max_target_seqs 10000 -perc_identity 90 -o -num_threads 32 Next, calculate pairwise ANI by combining local alignments between sequence pairs: anicalc.py -i -o Finally, pe...664 days ago
1130 days ago