BOL: Results for "Identifier"

Results for "Identifier"

- Neel@neelam
List of motif discovery tools !
...rces through the Distributed Annotation System Annotate protein using this integrated annotation resource. InterProScan -- protein domains identifier Identify protein family (and...
2035 days ago

- Jit@jit.aber
MGcV: the microbial genomic context viewer for comparative genome analysis
...o start using MGcV: Supply your genes/genomic segments/phylogenetic tree of interest in the input-box by selecting the type of identifier and pasting identifiers (one per line) or by u...
2330 days ago
- Abhimanyu Singh@abhimanyu
KEGG Mapper – Reconstruct Pathway
...ene lists (for multiple organisms) annotated with KEGG Orthology (KO) identifiers or K numbers. Each line of the gene list contains the user-defined gene identifier followed by, if any, the assi...
2013 days ago
+3 more Bookmarks

- Shikha Logwani@shikha
List of In-silico Binding Site Prediction Tools
...ding site. SitesBase: http://www.modelling.leeds.ac.uk/sb/ is a database of known ligand binding sites within the PDB which is navigable by PDB identifier or ligand 3 letter code e.g....
3786 days ago
- Manisha Mishra@manisha
Apps for Busy Bioinformatics Researchers !!!
...ou. After uploading your 23andMe raw data onto your iPhone via iTunes, GeneGroove will analyze your genome informations and generate a unique identifier key. This key, called the GeN...
3583 days ago
+1 more Top-level pages

- Rahul Nayak@rahul
Remove the fasta description and just keep the identifier. perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #Perl #Oneliner #Trick #Tips #Fasta #Identifier #Remove
3202 days ago
- Rahul Nayak@rahul
One liner to remove the description information from a fasta file and just keep the identifier $ perl -p -i -e 's/>(.+?) .+/>$1/g' sample1.fa #clean #header #fasta
1952 days ago

- Strand@Strand
Webinar on Unique Molecular Identifier (UMI)-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study
Webinar on Unique Molecular Identifier-powered Ultra-sensitive Variant Calling using Strand NGS - Case Study...formatics Engineer, Strand Life Sciences Abstract: Unique Molecular Identifiers (UMIs) are short random nucl...
2413 days ago

- Jit@jit.aber
Bam to Fastq convert !
#Long reads bedtools bamtofastq -i input.bam -fq output.fastq #For paired-end reads: samtools sort -n input.bam -o input_sorted.bam # sort reads by identifier-name (-n) bedtools bamtofastq -i input_sorted.bam -fq output_r1.fastq -fq2 output_r2.fastq
1038 days ago
- Abhi@abhinav
Python script to parse a FASTQ file !
#Python script to parse a FASTQ file and extract basic information such as the sequence identifier, sequence, and quality scores #pip install biopython from Bio import SeqIO def...
6 days ago

- Rahul Nayak@rahul
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
...file If you have a large number of sequences that you want to extract, then you most likely have the sequence identifiers in a separate file. Assuming that you have one sequence identifier per line in the file ids.file...
1952 days ago