3987 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...d non-model species. Peterson et al, PLoS One 7(5):e37135, . 2012. Full Text Imputation of unordered markers and the impact on genomic selection accuracy. Rutkowski et al, G3 3(3):427...3819 days ago
List of In-silico Binding Site Prediction Tools
...ned from PDB. A prediction was considered a true-positive if the predicted pocket had at-least 10% overlap with the actual ligand. The prediction accuracy using this set was about 96%....3784 days ago
Commercial and public next-gen-seq (NGS) software
...uy/exonerate/) MUMmer (http://mummer.sourceforge.net/) The mapping short reads called gnumap (http://dna.cs.byu.edu/gnumap/) made to increase the accuracy with duplicate matches. Open...3559 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...equencing, exome alignment, gene panels with validation control, variant analysis, and RNA-Seq, ChIP-Seq and miRNA alignment and analysis. #1 in accuracy: fewer false negatives and be...2949 days ago
2909 days ago
Genome Assembly Tools and Software - PART1 !!
...time in analysis and increasing accuracy of results by only considerin...ariants from the alignment to an accuracy comparable to conventional ma...information to improve assembly accuracy in the presence of repeats, i...blies of superior contiguity and accuracy, compared with the assemblies...2726 days ago
Mitochondrial genome assembly tools !
...data. MITOS2: MITOS2 is an updated version of the MITOS pipeline, which automates the annotation of mitochondrial genomes. It provides improved accuracy and additional features for m...282 days ago