Results for "BASE"
Top-level pages
Phylogenetic for Bioinformatics
...has become so popular that taxonomical schemes based solely on molecular data may...ponents even claim that taxonomy was previously based on morphology alone, which o...volutionary Biology Group Paleobiology Database PAUP Phylip Homepag...3999 days ago
Bioinformatics Companies in India
..., Bangalore-560082.www.bigtec.org 5. Bijam Biosciences Private LimitedNagarjuna Hills, Hyderabad 500 082, Indiawww.nagarjunagroup.com 6. Bio Base Databases India Pvt Ltd.Crescent Tower...3978 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ut sequencing data using reference-based compression. Fritz et al, Ge...entral Improving SNP discovery by base alignment quality. Li H, Bioi...alysis of high-throughput sequence-based experimental data. Carver et...overview of the Hadoop/MapReduce/HBase framework and its current app...3832 days ago
Commercial and public next-gen-seq (NGS) software
...software collection for fast index-based sequence comparison. It cont...d semiglobal non-gapped alignments based on k-mer seeds. http://bibis...xact matches in DNA or protein databases using a hash table. Develope.... PyroBayes - PyroBayes is a novel base caller for pyrosequences from...3571 days ago
Apps for Busy Bioinformatics Researchers !!!
...not require a network connection for local databases. View and search PubMed in...find variants of interest by filtering variants based on associated genes, functio...ee: iPhone/iPad TimeTree is a public knowledge-base for information on the evolut...3594 days ago
Software packages for next gen sequence analysis
...short sequences to a sequence database, such as the human reference...-Scale Alignment of Nucleotide Databases. Whole genome alignments to...xact matches in DNA or protein databases using a hash table. Develope...* PyroBayes - PyroBayes is a novel base caller for pyrosequences from...3295 days ago
- ...middle of a pipeline for format conversion. Reformat autodetects formats based on file extensions and conte...ends) Quality filtering Fixed-length trimming Generation of histograms (base composition, quality, etc) Su...
2766 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...Installation can be cloud-based or on a local cluster or Lin...written in C++, used on Linux based and Mac computers (not teste...section for SNP calling; Java based; for disease-control matched...cing motifs; uses ensembl database 70 Input: Gene Name, Ensembl...2961 days ago
Tools for Searching Repeats And Palindromic Sequences
...Duplications of simple sets of DNA bases (typically 1-5bp) such as A,...plications of more complex 100-200 base sequences.Segmental Duplicati...ins the same series of nitrogenous bases regardless from which direct...C, G, to represent the nitrogenous bases adenine, thymine, cytosine,...2264 days ago
- ...f 5M2I63M indicates that the first 5 base pairs of the read align to the reference, followed by 2 base pairs, which are unique to th...uality metrics, including quality of base calls, quality of mappings, a...port. EmulsionPCR A method for bead-based amplification of a library....
2922 days ago
