Useful Publications and Websites for Deep Sequencing Data Analysis
...netic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. Poland et al., PLoS One 7(2): e32253, 2012. Full Text Double digest RADseq: an inexpensive...3806 days ago
Perl one-liner for bioinformatician !!!
...u the shell warrior. Anything that took you minutes to solve, will now take you seconds!perl -pe '$\="\n"' #double space a fileperl -pe '$_ .= "\n" unless /^$/' #double space a file except blank lin...3655 days ago
Tools for Searching Repeats And Palindromic Sequences
...ng palindrome formation during gene amplification. Other studies have attempted to relate palindrome formation to molecular mechanisms involved in double stranded breaks and in the fo...2238 days ago
Converting BLAST output into CSV
...ues. To save this to a file, do: python /root/ngs-scripts/blast/blast-to-csv.py out.txt > ~out.csv If you have Excel installed, try double clicking on it.2364 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ .= "\n"'perl -pe 's/$/\n/'perl -nE 'say' # Double space a file, except the blan...2329 days ago