Results for "PacBio read correction"
Top-level pages
An algorithm is a computable set of steps to achieve a desired result....h manner that from the outcome we can read a definite answer, "yes" or "...ids recomputing solutions that have already been computed. - The ma...~jason/hmmlinks.html•http://www.breadfan.co...3999 days ago
Best book Titles for Learning Bionformatics
Nothing can add to our intellect more than reading a book. In books, we can e...ves and other people’s lives. Reading can make us more intelligent, updated, imaginative. Without reading we wouldn’t know any...Human Molecular Genetics, Andrew P. Read, Tom...3970 days ago
Most Commonly used Awk by Bioinformatician
Awk is a programming language that is specifically designed for quickly manipu...);print}' input.txt OK now here's where to read this stuff properly explained...d some nice explanations of those one-liners. After reading th...3965 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The...g-islands-in-vb6/ Fore detail understanding of HMM read this excellent tutorial http:...p://en.wikipedia.org/wiki/Viterbi_path For firther reading Wi...3877 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...: quality-aware detection and correction of sequencing errors. K...FASTX-toolkit: FASTQ/A short-reads pre-processing tools Home Pa...n FM-index of the 1.2 billion reads] Readjoiner: a fast and memory ef...Microindel detection in short-read sequence data. Krawitz et al, Bioin...3832 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/resource with brief description and homepage...hgri.nih.gov/gasp/GemSIM Next generation sequencing read simulator http://sourceforge....MetaSim A tool to generate collections of synthetic reads that...3790 days ago
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and utilities which will help y...For knowledge about Linux and their importance amongst bioinformatician plesae read this...3758 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data...ages like GenomicRanges, ShortRead, Rsamtools, etc. Documentatio...C-Seq packages including ShortRead, Rsamtools, rtracklayer, Geno...MotIV: Documentation ShortRead The ShortRead package provid...well as the incorporation of read cover...3677 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics...lter snps, do statistics for: reads, contigs and snps. Align/A...AST are designed to map short reads generated with the Illumina...of whole-genome shotgun microreads. ALLPATHS is a whole genome...short reads with robust error correction. An improvement on early vers...3571 days ago
- Subprocess is one of simplest way of running linux command from within python code Example: if you want to run...n(["fastqc","-f","fastq","-o", "/home/name/result/","/dev/stdin"],stdin=fopen("read.fastq...
3602 days ago
