Comment on "LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data"
Detail paper here https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8111061/18 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...ted paired-end and split-read analysis. [ paper-2012 ] lumpy &ndas...ework for structural variant discovery. [ paper-2014 ] manta &ndas...angement IDentification Software Suite. [ paper-2017 ]smoove &ndash...1194 days ago
Comment on "Basic command-line to run BLAST"
Original paper https://www.sciencedirect.com/science/article/pii/S00222836058036021347 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...tection tool. http://www.lcqb.upmc.fr/CHROnicle/SynChro.html https://pdfs.semanticscholar.org/5320/68e328d1aaefa435eefe679f54c018e5c2aa.pdf The paper conclude: SynChro is a fast,...1646 days ago
Comment on "List of motif discovery tools !"
Motif algorithms This link on Nature explain: how does DNA sequence motif discovery work? Paper on BMC bioinformatics: survey of DNA motif finding algorithms This paper discusses some limitations and potentials of motif discovery algorithms (2005)2034 days ago
Comment on "Run miniasm assembler on nanopore reads !"
Must read paper https://genome.cshlp.org/content/27/5/737.full2219 days ago
Comment on "Structural variation: the hidden genomic treasure"
This research paper is also useful http://www.sciencedirect.com/science/article/pii/S10462023163001842746 days ago
Comment on "Structural variation: the hidden genomic treasure"
This paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4479793/ provide many others tools and their comparative importance.2755 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
An intersting paper explaining comparative genomics in metazoan eukaryotes "COMPARATIVE GENOMICS: GENOME-WIDE ANALYSIS IN METAZOAN EUKARYOTES" https://www.cs.rice.edu/~devika/comp470/papers/ureta-vidal2003.pdf2785 days ago
Comment on "Comparative genomics educational material and papers bookmarks"
An intersting paper reviewed "An applications-focused review of comparative genomics tools: Capabilities, limitations and future challenges" http://bib.oxfordjournals.org/content/4/2/105.full.pdf2785 days ago