3984 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...tto et al. Genome Res 21(4):610-7, 2011. Full Text Restriction-site Associated DNA (RAD) markers Rapid SNP discovery and genetic mapping using sequenced RAD markers. Baird et al, PLo...3822 days ago
Commercial and public next-gen-seq (NGS) software
...ailable as part of the Vancouver Short Read Analysis Package MACS - Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced ChIP fragments, which tends t...3561 days ago
Software packages for next gen sequence analysis
...lable as part of the Vancouver Short Read Analysis Package * MACS - Model-based Analysis for ChIP-Seq. MACS empirically models the length of the sequenced ChIP fragments, which tends t...3285 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...of SNPs; “can be used as a standalone application with graphical user interface as part of pipeline system”; does not require fully sequenced reference genome; haplotype s...2951 days ago
2911 days ago
Genome Assembly Tools and Software - PART1 !!
...truct full-length genes when transcripts are sequenced sufficiently deep, roughly 30...repeat sequences, using Illumina read pairs sequenced from mixed populations at ext...s a method to align and connect the illumina sequenced Pair-End reads of which the i...2728 days ago
Tools for bacterial whole genome annotation
...r in KEGG Pathogen are special interfaces to this server and can be executed in an interactive mode. BlastKOALA is suitable for annotating fully sequenced genomes. PAGIT: Provides a t...2374 days ago
List of visualization tools for genome alignments
...ion to management and visualization of sequencing data http://wanglab.ucsd.edu/star/browser SVA Software for annotating and visualizing sequenced human genomes http://www.sva...2326 days ago