3989 days ago
3989 days ago
Most Commonly used Awk by Bioinformatician
...l[x]}' input.txt apply "uniq" on column 2, only printing the first occurrence (uniq): awk '!($2 in l){print;l[$2]=1}' input.txt count different words (wc): awk '{for(i=1;i!=NF;++...3955 days ago
Perl one-liner for bioinformatician !!!
...the patternperl -alne 'print scalar @F' #print the total number fields(words) in each line.perl -alne '$t += @F; END { print $t}' #Find total number of words in the fileperl -alne 'map {...3671 days ago
Commercial and public next-gen-seq (NGS) software
...gous SNPs and indels by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer words with high occurrence numbers....3562 days ago
Software packages for next gen sequence analysis
...gous SNPs and indels by aligning shotgun reads to the finished genome sequence. Highly repetitive elements are filtered out by ignoring those kmer words with high occurrence numbers....3285 days ago
Source Code and Pseudo Code !!
...t totals: Number of consecs, ascendings, and sorries. Stop Some Keywords That Should be Used And Additional Points For looping and selection, The keywords that are to be used include D...2702 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...s based on NGS reads using alignment-free sequence dissimilarity measures d2* and d2 S under different Markov chain models (using k-words) R package http://www-rcf.u...2414 days ago
Edit distance application in bioinformatics !
...qw(distance); print distance("foo","four"); # prints "2" my @words = qw/ four foo bar /; my @distances = distance("foo",@words); print "@distances"; #...2384 days ago
Bioinformatics Web Application Development with Perl
...ck) describes a strategy for building Perl web apps independent of server and with the possibility to share custom processing behaviors. In other words, it's a standard for writing...2364 days ago