List of generic simulation software/tools/resource with brief description and homepage !!!
...recombination patterns over large genomic regions under various demographic models http://cmpg.unibe.ch/software/simcoal2/SimCopy An R package simulating the evolution of copy number profiles along a tree....3765 days ago
Commercial and public next-gen-seq (NGS) software
...A-Seq, DNA Methylation, Gene Expression, Exon, miRNA Expression, Copy Number, Allele-Specific Copy Number, LOH, Association, Tri...ir Science publication CNV-Seq - CNV-seq, a new method to detect copy number variation using high-t...3547 days ago
Apps for Busy Bioinformatics Researchers !!!
...tools such as "Reverse Complement", "Jump to", "Copy and Paste sequences", fast an...aining cell lines can be queried for mutations. Copy Number Variation (CNV) plots...ome sequencing data including small variations, copy number variations (CNVs), and...3570 days ago
Software packages for next gen sequence analysis
...n's lab at UCLA). POSIX. * CHiPSeq - Program used by Johnson et al. (2007) in their Science publication * CNV-Seq - CNV-seq, a new method to detect copy number variation using high-t...3271 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
..., Mother-Father-Child Trio analysis, DNA Copy number including allele specific copy number and Loss of Heterozygo...ne program; “accurate detection of copy number alteration and loss of...te purity and ploidy to compute absolute copy number and mutation multiplic...2937 days ago
2902 days ago
Genome Assembly Tools and Software - PART1 !!
..., novel sequence insertions, translocations and copy numbers REPdenovo &ndash...lso provide the average coverage (indicates the copy number) for each constructed...ssembly and Annotation Completeness with Single-copy Orthologs BUSCO completene...2714 days ago
Quick next generation sequencing (NGS) terms definition
...Poisson distribution. Therefore, if the read depth over a certain region deviates significantly from this distribution, it signals for a potential copy number variation (CNV)....2550 days ago
Awesome perl frameworks, libraries and software - PART 1
...lModules - (Very) simple scripts for some Perl modules, intended as copy paste templates. Ovid/Role-B...bruceravel/demeter - Process and analyze X-ray Absorption Spectroscopy data using Feff and either La...2517 days ago
2517 days ago