Results for "BASE"
Top-level pages
Genome Assembly Tools and Software - PART1 !!
...d into two categories: string-based model and graph-based model. We therefore list ma...chmarking DNA assembly tools, based on 3rd generation sequencers...– Short-read Assembler based on a de Bruijn graph Mini...zation) is an interactive web-based tool for the visual explorat...2741 days ago
Perl Special Vars Quick Reference
...ool. $^P Internal variable for debugging support. $^R Last regexp (?{code}) result. $^S Exceptions being caught. (eval) $^T Base time of program start. $...2699 days ago
Quick next generation sequencing (NGS) terms definition
...ome. Overall genome-wide read depth is also referred to as depth of coverage. It is expected that the number of reads that “cover” each base-pair to follow a Poisson dist...2577 days ago
Awesome perl frameworks, libraries and software - PART 1
...miyagawa/remedie - perl based pluggable media center appli...e check out the new OpenResty based on Nginx and Lua instead. k...ail - Perl/Catalyst/AJAX based Webmail barbie/perl-jam&nbs... - Create MaxMind DB database files mattn/p5-Growl-Any&nbs...2544 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all r...sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the...2385 days ago
- IUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C......................A or C or T V.................A or C or G N.................any base . or -............gap Protei...
2300 days ago
- ...lename.fasta To copy (move, rename, etc) files based on their list in a text file...r: cat *.fastq | echo $((`wc -l`/4)) To count base pairs in a all .fastq.gz file...ce: tr -s " " < file To filter fastq based on length (here larger than...
2272 days ago
- ...100%Selecting previously unselected package python-pymysql.(Reading database ... 435155 files and director...g triggers for mime-support (3.59ubuntu1) ...Processing triggers for doc-base (0.10.7) ...Processing 5 adde...
2245 days ago
Creating conda environment for python2.7
...t; WARNING: A newer version of conda exists. <== current version: 4.5.0 latest version: 4.5.2 Please update conda by running $ conda update -n base conda ## Package Pla...2245 days ago
LINKS scaffolder bloomfilter setting !
...ional) *higher values lead to least accurate scaffolding* -z minimum contig length to consider for scaffolding (default -z 500, optional) -b base name for your output files (o...2206 days ago
- « Previous
- 1
- 2
- Next »
