Results for "BLAST databases"
Top-level pages
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor packages for NGS data analysis, some of t...biomaRt The biomaRt package, provides an interface to a growing collection of databases implementing the BioMart soft...3679 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo...ND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome alignments to a...pidly finding near exact matches in DNA or protein databases using a hash table. Developed...3573 days ago
Apps for Busy Bioinformatics Researchers !!!
...zip apps, and also web-tools like Blast, this app allows you to analy...zip apps, and also web-tools like Blast, this app allows you to analy...re a network connection for local databases. View and search PubMed in t...s-references with various genomic databases. Collaborate on variant asse...3596 days ago
- ...rrelation between the information in one of the pathway knowledge databases (KEGG,Reactome,Panther,Bi...io, KEGG, NCI, Stringdb, Amigo, WebGestalt ,ConsensusPathDB ,GSEA,Blast2go Popular R based tools: React...
3550 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de no...ND - Efficient Large-Scale Alignment of Nucleotide Databases. Whole genome alignments to a...pidly finding near exact matches in DNA or protein databases using a hash table. Developed...3297 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes insi...ewer Data mapping on BioCyc pathways (collection of 5500 pathway/genome databases) http://www.biocyc.org/ Pat...2342 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...niques, depends upon multiple databases (each needing to be downloade...esidues- collected though PSI-BLAST; can be applied to nonsynonymous...l effects of a mutation; Uses BLAST against UniProt and PDB along wit...) queries of the SNP and gene databases; (ii) analysis using the atta...2963 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation &...performs enrichment analysis in real-time (v1.1 and above) by accessing source databases. With command-line versions o...2926 days ago
Genome Assembly Tools and Software - PART1 !!
...mbly Clotho provides persistence to such objects through relational databases that at least partially c...e query reference protein. GRASP achieves much higher sensitivity than BLASTP for gene annotation purpose....2740 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTun...tTofu/DBD-mysql - DBD::mysql Perl client driver for the MySQL and MariaDB databases beide/Bootimg-scripts -...2544 days ago
