2395 days ago
Converting BLAST output into CSV
...t, using a Python script. First, we need to get the script. We’ll do that using the ‘git’ program: git clone https://github.com/ngs-docs/ngs-scripts.git...2381 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outpu...2374 days ago
List of visualization tools for network biology
...are http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin that can be used to identify dynamic communities in networks https://github.com/juliemkauffman/DyCoNet G...2332 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-ce...894 days ago
Python learning resources for bioinformatics and computational biologist !
...ramminglanguagefor.me/why-learn-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-perl More resources at https://github.com/CodementorIO/Python-Learn...2299 days ago
Some useful Bioinformatics links
...rom raw set(s) of reads. https://github.com/GATB/DiscoSnp De novo ass...umina polishing pipeline https://github.com/nanoporetech/ont-assembly...LC) Metagenome Assembler https://github.com/abiswas-odu/Disco SAGE: S...filtering oneliners https://gist.github.com/davfre/8596159 Inroductio...2286 days ago
627 days ago