Genome Assembly Tools and Software - PART1 !!
...ipts that map assembled contigs to known transcripts, currently suppo...automated sequencers and is widely known for its lightning-fast conti...c datasets. The command-line Perl script and additional files v...sers without further computational knowledge can easily operate the p...2712 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine param...ss. $0 Program name. $^O Operating System name. Perl Status Info $] Old: Version and patch number of perl interpreter. Deprecated....2671 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with...from parsed results. Formerly known as bounceHammer 4: an error...n into a database. ( Formerly known as imap-dmarcts ) prepan-de...2516 days ago
2515 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...RScope/wiki FastGT Genotyping of known SNV/SNP variants directly fr...gomez/phy-mer LAVA Genotyping of known SNPs (dbSNP and Affymetrix's...o reads, draft genomes) Software (Perl) https://github.com/warrenlr...sification of metagenomic reads to known bacterial genomes using ...2398 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, w...::Levenshtein::Damerau defaults to using a pure perl implementation, but if you've...n edit distance. Text::Fuzzy::PP is a pure perl implementation of the same in...2367 days ago
Bioinformatics Web Application Development with Perl
...dash;were easy to create with Perl and CGI. Thanks to Perl's ubiquity as a language for...most mature of the modern top Perl web frameworks, yet it retain...ode. Because it builds on the Perl DBI, it scales everywhere fro...d more. Rose::DB The lesser-known but no less powerful Ro...2348 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -...ch a pattern (emulate grep -c)perl -lne '$a++ if /regex/; END {p...Time) and local computer timeperl -le 'print scalar gmtime'perl...print encode_base64("string")'perl -MMIME::Base64 -0777 -ne 'pri...2329 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about...n-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-perl More resources at https...2282 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they...a somewhat recent version of Perl (ver...build system type... x86_64-unknown-linux-gnuchecking host system type... x86_64-unknown-linux-gnuchecking for cos in...ar zxf Bio::SCF.tarcd Bio::SCFperl Makefile.PLmakemake testmake...2245 days ago