Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence read...de novo assembly of large scale NGS data by conducting family-spe...ng with the rest of your typical NGS workfl...d NGS paired-read data (FASTA or FAST...r large and complex metagenomics NGS reads, such as soil. It makes u...2712 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled f...2549 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software....nium-Remote-Driver - Perl Bindings to the Selenium Webdriver ser...e to SVG renderer in Perl famzah/langs-perfor...FFI-Platypus - Write Perl bindings...erate and validate 'CouponCode' strings...2516 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data...re (C++) http://www.cs.cmu.edu/~ckingsf/software/sailfish/ Salmon...SNV/SNP variants directly from raw NGS sequen...nome-Wide Human SNP Array) from raw NGS...urceforge.net/projects/ksnp/files/ NGS-M...2398 days ago
2378 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s the case...o;ll do that using the ‘git’ program: git clone https://github.com/ngs-docs/ngs-s...2364 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings.... Find the detail of the reads repeats: fq2fa ONT_A.fastq ONT_A.fasta minimap2 -xa...2357 days ago
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List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for...equence features, next-generation sequencing (NGS) data....htm JVM Java Visual Mapping tool for NGS...eGUI Handling genome position files in NGS s...2311 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS a...2307 days ago