Results for "PacBio read correction"
Top-level pages
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomi...per - GenomeMapper is a short read mapping tool designed for acc...d-end and single-end Illumina reads. Uses a Needleman-Wunsch alg...brid de-novo assemblies using reads gathered through 454 sequenc...short reads with robust error correction. An improvement on early vers...3295 days ago
- Reformat is a member of the BBMap/BBTools package. It is a multi...terleaved files It is multithreaded and can process data at ove...pling (to a fraction of input reads, or an exact number of reads...ally use a shortcut if paired read files have the same name with...to/bbmap/current/ jgi.ReformatReads" for...
2766 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS of...sequencing Input: files with read alignment can be SOAP or SAM...- predicts indels, uses split read alignment profiles, validated...ic SNVs with multiple testing correction, uses Fisher’s ex...ut: CRAVAT report- MS Excel spreadsheet or tab-separated file (emailed...2961 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that m...does not matter whether the nucleic acid strand is read starting from the 3' (three p...indromes the sequences on the complimentary strands read the s...2264 days ago
- Linux Commands Cheat Sheet File System ls — list items in c...nbsp; 7 — full permissions 6 — read and write only 5 — read and e...
2927 days ago
- alignment: the mapping of a raw sequence read to a location within a refere...are for aligning raw sequence reads to a reference genome. BAM...e alignment of a raw sequence read to the reference genome. Thre...very low probability that the reads in your sample support a TT...
2922 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value...sing Reference and Paired-end Reads misFinder is a tool that...SMRT sequencing technologies (PacBio RS II) and Oxford Nanopore...Minia 2.0.3 – Short-read Assembler based on a de Bruij...2738 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to...first char of string to screen set read character to hold character While next character read != blanks and white space...e and source code too. It really hels the readabilit...2711 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b...Input / Output layer information. ${^UNICODE} Read-only Unicode settings. $...mplement scoped pragmas. ${^TAINT} Taint mode read-only...2697 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragme...x]. Most (>90%) of paired-end reads are sampled from no-SV regio...S data set separately.concordant reads: a read pair is called...t, by definition, the discordant read pairs...2575 days ago
