Genome Assembly Tools and Software - PART1 !!
...ity to Clotho such as viewing and editing data, running simulations, and automati...otho Apps, an appropriate analogy would be Apps running on the Android operating...ads assembler. It is fully parallelized and can run with as low as just a few kil...2728 days ago
Awesome perl frameworks, libraries and software - PART 1
...supervision shell for daemontools, perp, s6 and runit skx/templer - A modul...ction of Perl scripts (examples, programs) that run on Android using ASE typeste...it-svn Perl-Toolchain-Gang/Test-Harness - Run Perl standard test scripts wi...2532 days ago
2393 days ago
Converting BLAST output into CSV
...hes, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is i...o;ve placed the files in /root/ngs-scripts/, and you’re looking to run the script blast/blast-to-csv...2379 days ago
Run miniasm assembler on nanopore reads !
Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and out...2372 days ago
Bioinformatics Web Application Development with Perl
...rength of the CPAN. Almost any project will benefit from the wealth of freely available libraries built to solve real problems. These distributions run the gamut from full-blown web...2364 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
..., either quantifying how many reads go to each reference, or splitting the reads into multiple output files, one per reference. BBSplit can only be run using references indexed with...2357 days ago
List of visualization tools for genome alignments
...ible http://www.htslib.org/ SEWAL Uses a locality-sensitive hashing algorithm to enumerate all unique sequences in an entire Illumina sequencing run http://www.sourceforge.net/p...2326 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...possible locations of app which app — show which app will be run by default Process Manageme...sh; display your currently active processes top — display all running processes kill pid &...2323 days ago
Installing Bio::SCF perl module
...cking for ranlib... ranlibchecking for main in -lz... yeschecking how to run the C preprocessor... gcc -Ec...]cp SCF.pm blib/lib/Bio/SCF.pmcp SCF/Arrays.pm blib/lib/Bio/SCF/Arrays.pmRunning Mkbootstrap for Bio::SCF...2261 days ago