Results for "plant genome"
Top-level pages
Useful Publications and Websites for Deep Sequencing Data Analysis
...tion quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text...us japonicus. Urbański et al, Plant J 64:731-741, 2012. Publisher...asis for the screencast The iPlant Collaborative, an NSF-funded p...3831 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared...information about biological sequences collected from the environment. GenomeSpace http://www.genomespace.org/ Centralized web ap...3808 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...on test bed for hypotheses of genome evolution http://acb.qfab.org...ts/gametes/?source=navbarGASP Genometric Analysis Simulation Progr...al composition of typical metagenome data sets http://ab.inf.uni-t...simulated genotypes http://evoplant.uni-hohenheim.de/doku.php?id=s...3789 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor...s, rtracklayer, GenomicFeatures and BSgenome. Compared to the IRange...for SNP analysis: snpMatrix BSgenome BSgenome provides an object...s the biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest and stat pac...3676 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomic...uences produced on a Illumina Genome Analyzer. A suite created by..., such as the human reference genome. By default, BWA finds an ali...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...zner from UCSD. (published in Genome Research)RMAP (A program for...3571 days ago
- Since few years miRNA has shown to play important role in therapeutic related research...or : http://www.microrna.org/microrna/home.do Plant miRNA DB :http://bioinformati...cn/PMRD/ miRBASE DB: http://www.mirbase.org/ Plant...
3548 days ago
Using Interval Trees to Query Genome Annotations by Position
To work on query related to overlapping genomic features: use IntervalTree python pkg http://informatics.malariagen.net/2011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ htt...3601 days ago
Apps for Busy Bioinformatics Researchers !!!
.... Gene indexes for many mammals, plants, invertebrates, and bacteria...MIC, KEGG, PubMed, SymAtlas, UCSC genome browser, Pathway Commons, Gen...s/app/geneindex/id319769866?mt=8 Genome Voyager: iPad Gain first han...imGene alsocontains an integrated genome browser with information on g...3593 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
..., New Delhi National Centre For Plant Genome Research (NCPGR), JNU, New D...itute of Medicinal & Aromatic Plants, Lucknow CMERI - Central M...earch Centre National Bureau of Plant Genetic Resources National...earch Institute (CMFRI) Central Plantation Crops Research Institute...2622 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genom...uences produced on a Illumina Genome Analyzer. A suite created by...f Nucleotide Databases. Whole genome alignments to a reference gen...na reads to a FASTA reference genome. By Andrew D. Smith and Zheny...om the Canada's Michael Smith Genome Sciences Centre. Perl/Linux....3294 days ago
