Software packages for next gen sequence analysis
...WA - Heng Lee's BWT Alignment program - a progression from Maq. BWA...Genomic Mapping and Alignment Program) for mRNA and EST Sequences....ort Oligonucleotide Alignment Program). A program for efficient gap...at UCLA). POSIX. * CHiPSeq - Program used by Johnson et al. (2007)...3286 days ago
2757 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many di...caller, Python language, standalone program, uncovers cell-population het...end reads; standalone, command line program; Written in C++ and Python I...on: command-line, standalone package program; available in Perl, Python, a...2952 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...ions. Human Frontier Science Program: Research grants from th...ding of disease. This ongoing program includes grants for immunolog.... Bush Foundation Fellowship Program: Leadership’s many...International Research Grants Program: The IRGP seeks to promo...2981 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of s...– SOLiD Assembler TRAnslation Program A color space assembly m...SATRAP can be used as a stand alone program to perform color space transl...om a good number of tests we see the program yields excellent results both...2729 days ago
Source Code and Pseudo Code !!
...informal language that helps programmers develop algorithms. Pseud...so as to directly support the programming effort. It is the purpose...al to its implementation in a programming language. Try to indent a...functions. It will make your program much more readable. SPELLIN...2702 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subrouti...$) Effective group id of process. $0 Program name. $^O Operating Sys...tions being caught. (eval) $^T Base time of program start. $^V Perl version...2687 days ago
Awesome perl frameworks, libraries and software - PART 1
...l open source home automation program. It's fun, it's free, and it'...le and consistent application programming interface to the World-Wi...ary for writing reactive Perl programs. It provides base classes fo...ERR from Perl, XS or external programs beppu/squatting - A Ca...2532 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this...l BLAST, or something. As with most programs that run on UNIX, the text o...t is in some specific format. If the program is popular enough, there will...do that using the ‘git’ program: git clone https://githu...2380 days ago
Bioinformatics Web Application Development with Perl
...elopment The old days of CGI programs and the simple development s...dule central, modern Perl web programming follows a stricter separa...and applications, though good programmers can build larger things w...prowess as a general purpose programming language as well as its f...2365 days ago