Results for "PA"
Top-level pages
...ides in length. There are different types of SSRs based on the length and pattern of the repeated sequence...of SSR contains two or more repeat motifs lying adjacent to each other, separated by no or very few interv...475 days ago
Tools for Geospatial data analysis !
...GPS data, and other forms of spatial data. They can help you v...t popular and widely used geospatial tools available in Python...d analysis, such as Fiona, GeoPandas, and Rasterio, which allo...to enhance your skills in geospatial analysis, this list is de...463 days ago
Bioinformatics tools for genome assembly !
...ast update in September 2021: SPAdes: An assembler specifically...l eukaryotic genomes. ABySS: A parallelized assembler for large...technologies, such as Illumina and PacBio. Canu: A long-read a...ut-Consensus approach, suitable for PacBio and Nanopore data. S...338 days ago
Steps to find all the repeats in the genome !
...he RepeatMasker website[0]. Prepare the genome sequence: Make s...genome.fasta". ./RepeatMasker -pa <number_of_processors>...cessors/threads you want to use for parallel processing. <diverg...ipt, you can run it to conveniently parse the RepeatMasker output fi...300 days ago
Mitochondrial genome assembly tools !
...drial genome is relatively small compared to the nuclear genome, mak...mitochondrial genome assembly from PacBio high fidelity reads MITO...itochondrial genome assembly. It is particularly useful for dealing...the right tool will depend on your particular project requirements....295 days ago
