Results for "Assembled DNA"
Top-level pages
...sequencing, both ends of a single DNA or RNA fragment are sequenced, but...rocess where both ends of a single DNA or RNA fragment are sequenced...ng process where only one end of a DNA or RNA fragment is sequenced....encesequence/genome A fully assembled version of a genome tha...2906 days ago
Genome Assembly Tools and Software - PART1 !!
...itable for comparison. DNA Baser 4.36 – DNA Sequence Assembly & Analysis...MaxBin 2.2 – Binning Assembled Metagenomic Sequences MaxBin is software for binning assembled metagenomic sequences based o...ect these errors at their mis-assembled positions to improve the asse...2723 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in t...ly reflects evolutionary history. cDNA -- Complementary DNA; DNA that is synthesized, by...sequence isolated at random from a cDNA library, used for identificat...o with any other clade. repetitive DNA -- Sequences of DNA that are...2499 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignmen...ics AAF Phylogeny reconstruction directly from unassembled raw sequence data from whole...om/pdtrang/GSM Mash Species identification using ass...2408 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final re...ttp://www.sanger.ac.uk/resources/software/artemis/ DNannotator Annotation web...onal genomic sequences http://bioapp.psych.uic.edu/DNannotator.htm JVM Java...2321 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movemen...a eukaryotic species to gain a gene by HGT, foreign DNA must enter the host nucleus,...e donor and the host. Over the longer term, foreign DNA may become “domesticate...887 days ago
Some useful Bioinformatics links
.../genomics/satsuma/ A complete bacterial genome assembled de novo using only nanopore s...dot plot for genome-genome alignments https://dnanexus.github.io/dot/ Zoho Acco...n — an evolutionarily conserved role for DNA inverted repeats in the genom...2279 days ago
- IUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymin...
2282 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental inves...dquo;Evaluation of the disease‐causing potential of DNA sequence alterations”...hat would have occurred if the element were neutral DNA, but did not occur because th...2240 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a...on with an empirical scoring function Other Sites (DNA, RNA, Metals) CHED We...ter A knowledge-based method for the prediction of DNA-protein interactions DISPLAR...2239 days ago
