Results for "Big data"
Top-level pages
Since few years miRNA has shown to play important role i...DBs and tools related with miRNA: miRNA Sequencing data analysis : http://tools...._prediction.html Idea of analysing miRNA Sequencing data : http://www.illumina.com/ap...3548 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is...nteractions, COSMIC mutations, and CNV data for cell lines. Does not require a network connection for local databases. View and search PubMed...Med, Genomic Variations and many other databases to retrieve up-to-date a...3593 days ago
- Pathway Analysis is usually performed with...nomics, transcriptomics and proteomics data, interactions between genes i...mation in one of the pathway knowledge databases (KEGG,Reactome,Panther,B...ic/Pathways_2014_Module2.pdf Impotant Database and Tools: GeneMANIA, Cy...
3548 days ago
A guide for complete R beginners !
This tutorial is intended to introduce users quickly to...mated script to perform again and again on different data Disadvantages Lack...aration (Optional) Download and save the tutorial data set from http://bioinforma...3413 days ago
Software packages for next gen sequence analysis
...functions to handle ABI SOLiD data. Written by Heng Li from the.... Supports Illumina and SOLiD data. De novo Align/Assemble * AB...n a graph form that retains ambiguities, such as those arising f...nding sites based on ChIP-Seq data. (C++) * SISSRs - Site Identi...3294 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways i...e one leading method in -omics data analysis and visualization....ework targeted at biomolecular data. Visualization of interdepend...nbsp; Visualizing multi-omics data in metabolic networks https:...ironment composed of a central database and a visual editor, buil...2339 days ago
- Reformat is a member of the BBMap/BBTools package. It is...ol designed for converting reads or other nucleotide data between different formats. It...terleaved files It is multithreaded and can process data at over 500 megabytes per sec...
2765 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...BED, Agilent files, NimbleGen data summary files, VCF files, Imp...om high-throughput sequencing datasets; calls variants found in...”; no actual expression data used, only in silico expressi...1000 genomes, HapMap, OMIM, NCBIGene Output: VCF + JSON CA...2960 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367befcf5216be4b1fd9...on.txt) Note: You can download GTF files from http://www.ensembl.org/info/data/ftp/index.html
2158 days ago
- alignment: the mapping of a raw se...pressed format for storing SAM data. BCF Format: Binary call for...pressed format for storing VCF data. CIGAR String: Compact Idios...ormat for storing raw sequence data. For example, the FASTA file...odes multiple elements of meta-data regarding a read and its alig...
2921 days ago
