List of Bioinformatics Software Tools for Next Generation Sequencing
...Description: family-based sequencing studies- provides probability...“The output format is a single row for each putative de novo mut...rdquo;can accept a variety of sequencing inputs and configurations&rdq...s mutations discovered in DNA sequencing to identify genes that were m...2939 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches...3' (phosphate bound to the 3' carbon) ends to indicate a polarity within the molecule....2242 days ago
2900 days ago
Genome Assembly Tools and Software - PART1 !!
...designed to assemble Illumina single or paired-end reads. Rnnotator is..., like those produced by SMRT sequencing technologies (PacBio RS II) a...designed for short reads. The single-processor version is useful for a...be used to characterize novel sequencing targets. SGA 0.10.14 &nd...2716 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and...******************************************* Function: ( cryptic text describing single fun...2690 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from...2553 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. maj...ormation evalEmpire/perl5i - A single m...ion of utilities for Next-Generation Sequencing (NGS) data analysis masukomi...n Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet&n...2520 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two differen...s -- The development of a new clade; the splitting of a single l...oup -- The two clades resulting from the splitting of a single lin...2493 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses.../main/qcluster.html Reads error correction Lighter Correction of sequencing errors in raw, whole genome sequencing reads (k-mer based) Software...2402 days ago
2382 days ago