Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (th...OURCE=1 -DHAVE_HIDDEN -c -o gzread.o gzread.cgcc -O3 -D_LARGEFILE64_SOURC...look for a library named "libread". jitendra@jitendra-UNLOCK-I.... -I.. -I.. -I../include -I../read -I../alf -I../abi -I../ctf -I...PIC -o scf_dump scf_dump.o ../read/...2246 days ago
2245 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology...tein-protein interaction sites HOMCOS A server to predict interacting protein pairs and interacting sites by homo...2230 days ago
2218 days ago
LINKS scaffolder bloomfilter setting !
...b/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char...b/perl5/5.22.0/x86_64-linux-thread-multi/CORE/ -fPIC -Dbool=char...s, full path to long sequence reads or MPET pairs [see below] (Multi-FASTA/fast...C -d distance between k-mer pairs (ie. target distances to re-s...2179 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple process...sis. One best way is using perl threads and forks. Knowing how these threads and forks work is very impor...wards using perl fork than perl threads. One of the oldest way to f...max_processors);while (my $file = readd...2108 days ago
2091 days ago
920 days ago
Short-read assembly using Spades !
If we only had Illumina reads, we could also assemble these using the tool Spades. You can try this...ta as we used above: illumina_R1.fastq.gz: the Illumina forward reads illumina_R2.fastq.gz: the Illumina reverse reads...853 days ago
611 days ago