Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web pages—the precursor t...lly, Mojolicious by design provides most of what an average app might need in a sing...2340 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best....)In this case, "int=t" means that the input file is paired and interleaved. For sing...2332 days ago
List of visualization tools for network biology
Network analysis is any structured techn...i-saarland.de/chair/projects/BioMiner Cell Illustrator Petri nets...lating biological networks http://www.cellillustrator.com COPASI Analy...ata http://pixie.princeton.edu/pixie CellPublisher Interactive represe...2306 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improvin...pth read pileups and easy visualization of putative single nucleotide and structural var...gicviewer/ MapView Alignments of huge-scale sing...2302 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze...isease management and prenatal testing. Dr. Suman holds a Ph.D in Molecular and Cell Biology from Indian Institute...2282 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
...en two organisms” , is relatively common in prokaryotes and single-celled eukaryotes, but a number of factors combine to make it far rarer in multicellular eukaryotes. In order for...868 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge...ces of both coding variants, that is, nonsynonymous single‐nucleotide variants, and nonc...ces of both coding variants, that is, nonsynonymous sing...2221 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensi...SOAP2 http://soap.genomics.org.cn/index.html Single-sample High-quality variant d...NP) Package for NGS data analysis, which includes a sing...2114 days ago
Parallel Processing with Perl !
Here is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is...se a mysql database LOAD DATA LOCAL INFILE command to load all the files into a sing...2098 days ago
Bioinformatics tools for genome assembly !
...st of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for single-cell and multi-cell bacterial genomes, as well as...304 days ago