Results for "N"
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Perl Special Vars Quick Reference
...it variable. @_ Subroutine parameters. $a$b sort comparison routine variabl...ATCH} Similar to $& without performance penalt...the Encode object, used to convert the source code to Unicod...pe close, backtick (`` ) command, successful call to wait() o...2696 days ago
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of long...ural variants, mapping locations of the paired ends span with...separately.concordant reads: a read pair is called conc...otential SVs. The sequence signature produced by these type o...2574 days ago
Awesome perl frameworks, libraries and software - PART 1
...e Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a.../log4perl - Log4j Implementation For Perl centreon/cent...sing the Catalyst framework. nassosoassos/sail_align -...way kraih/perl-raptor - Perl 5 Raptor KKBOX/mpdns...2541 days ago
- It is often necessary to import sample textbook data into R before you start working on your homework. Excel...sp;# load XLConnect package > wk&...(read.spss) &n...function getwd. > getwd() &...
2541 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancestors. ancestor -- Any organism, population, or spe...ine when the structure has been modified through descent. hy...roup -- The two clades resulting from the splitting of a sing...2514 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with ta...(C) https://github.com/lh3/minimap Assembly De novo genome...Phylogeny of species based on NGS reads using alignment-fre...2423 days ago
- When you have both Illumina and Nanopore data, then SPAdes remains a good option for hybrid ass...ed-end reads -1 <filename> file with forward...--mp<#>-1 <filename> file with forward...from <cp> restart run with updated options and from...
2403 days ago
Single Cell RNAseq data analysis tutorial !!
...rough (replaced microarrays) in the late 00’s and has been widely used since...f the same tissue from different species Useful for quantify...s://research.cchmc.org/pbge/sincera.html SC3 – consens...io/scLVM Selective Locally linear Inference of Cellular Expr...2402 days ago
- RNA-sequencing (RNA-seq) has a wide variety of applications, but no single analysis pipeline can be used in all cases. We...ps in RNA-seq data analysis, including experimental design, q...cript expression analysis of RNA-seq experiments with TopHat...
2402 days ago
Edit distance application in bioinformatics !
...are other popular measures of edit distance, which are calculated using a different set of allowable edit operat...distance allows only insertion and deletion, not substitutio...istance("foo",@words); print "@distances"; # prints "2..., but will be a lot faster than this module. The Damerau-Lev...2393 days ago
