Bioinformatics Web Application Development with Perl
...ular, a modern Perl developer can do amazing things with moder...in particular stand out. You can build web sites and web appl...b sockets, and HTTP 2. Where Catalyst embraces the CPAN fully...duces Excel spreadsheets, you can glue together a few CPAN dis...2363 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...ultiple output files, one per reference. BBSplit can only be run using references...additional information regarding which sequences came from which reference file....ella reads)clean.fq (unmapped reads)In this case, "int=t" means that the inp...2356 days ago
2347 days ago
PerlOneLiner for Bioinformatician
...file using a custom format (emulate cat -n)perl -ne 'printf "%-5d %s...int $n=()=<>'perl -le 'print scalar(()=<>)'perl -le 'pri...rds) on each lineperl -alne 'print scalar @F' # Print the total num...rl -le '@array = ("a".."z"); print scalar @array'perl -le '@array =...2344 days ago
List of visualization tools for network biology
...://www.biolayout.org/ BiologicalNetworks Efficient int...w.cytoscape.org/ Dizzy Chemical kinetics stochastic simulati...protein complexes from purification data experiments http://...redicted interactions of chemicals and proteins http://stitch...2330 days ago
List of visualization tools for genome alignments
...ds to better results. But sometime, we need publication ready figure of genomes....results: ABySS Explorer Interactive Java application that uses a novel graph-b...Visualization of short read alignment, identification of genetic variation and...2326 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...o see perimissions, size, and modification date ls -a — l... — create or update file cat file — output the...is app — show possible locations of app which app &m...instances of file in real system locate file — find all...2322 days ago
Awk for Bioinformatician and computational biologist
...ata and is mostly used for pattern scanning and processing. It searc...tsv with the following contents: $ cat data/test.tsvcontig1 ACTGTCT...nt;}' data/test.tsvcontig1 ACTGTCTGTCACTGTGTTGTGATGTTGTGTGTGcontig2....tsvHeader,Sequencecontig1,ACTGTCTGTCACTGTGTTGTGATGTTGTGTGTGcontig2,...2322 days ago
Computational resources for TE discovery and TE detection
...their computational analysis. Following are the list of resource and location for TE discovery and TE d...tgdb.org/prj/TE_nest/TE_nest.html TRANSPO http://alggen.lsi.upc.es/recerca/search/transpo/transpo.html...2316 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...d NGS also supports novel discovery like identification of novel genes, exons and...ighlight the use of Strand NGS features such as PCA, sample correlation, clusteri...About Speaker: Dr. Suman Kapoor, Manager- Application Science at Strand Life Sc...2306 days ago