Results for "N"
Top-level pages
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
...se of this cheat sheet is to introduce biologist and bioinformatician to the frequently used tools for NGS analysis as well as giving...shutdown — shut down machine reboot — r...a file scp user@host:file dir — secure copy a file...2332 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It s...be stored in $1, $2, $3, $4 and $5. $0 represents the whole...CTGTCACTGTGTTGTGATGTTGTGTGTGcontig2 ACTTTATATATTcontig3contig...2331 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has gen...t.wustl.edu/maskeraid/ mer-engine http://mer-engine.cshl.ed...o.html TSDfinder http://www.ncbi.nlm.nih.gov/CBBresearch/La...2326 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data using a very intuitive workflow for the analysis and visualization of RN...ich includes Transcriptome/ Genome alignment, Differential ex...features in the RNA-Seq data analysis workflow in Strand NGS....2316 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two orga...or a eukaryotic species to gain a gene by HGT, foreign DNA mu...tion, despite potential for genetic incompatibility with the...4.01 HGT detection / download binary (!license!) 20181...902 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about a...f - Al Sweigart Biopython (PDF) Build application...How to Make Mistakes in Python - Mike Pirnat (PDF) (1st...ormatics: Exploring Information (2.7.5) Python for...2307 days ago
- ...- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine....................A or C or G N.................any base . or.......Cys.................Cysteine D.................Asp...............Val.................Valine W.................Trp.........
2297 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioi...- PubMed - NCBI https://www.ncbi.nlm.nih.gov/pubmed/2418509...k https://rrwick.github.io/Bandage/ Codon Optimization OnLin...ces https://github.com/lh3/minimap2 SSPACE-LongRead: scaffol...2293 days ago
- To remove all line ends (\n) from a Unix text file: sed ':a;N;$!ba;s/\n//g' filename.txt > newfilename_oneline.txt To get averag...| echo $((`wc -l`/4)) To count reads in a all .fastq files...irst}' myfile.txt To sample only 200 first bases from all se...
2269 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so require a C&nbs...GEFILE64_SOURCE=1 -DHAVE_HIDDEN -o minigzipsh minigzip.o -L....deps/translate.Tpo" ".deps/translate.Po"; else rm -f ".deps/t...vlen.o `test -f '../utils/vlen.c' || echo './'`../utils/vlen...2270 days ago
