Results for "generated"
Top-level pages
List of In-silico Binding Site Prediction Tools
...n Data Bank format (PDB) containing a single frame or multiple frames generated by molecular dynamics (MD) si...ets [Zhu2011]. The approach is based on the solvent excluded surfaces generated by MSMS [Sanner1996]. Pfinde...3790 days ago
Next generation sequencing in R or bioconductor environment
...e with the raw read counts per region/gene of interest (rows) for each test sample (columns). Such a count table can be imported into R or generated from BAM alignment files usin...3671 days ago
Commercial and public next-gen-seq (NGS) software
...Written by Michael Strömberg at Boston College. Win/Linux/MacOSX MrFAST and MrsFAST - mrFAST & mrsFAST are designed to map short reads generated with the Illumina platform to...3565 days ago
Software packages for next gen sequence analysis
...ritten by Michael Strömberg at Boston College. Win/Linux/MacOSX * MrFAST and MrsFAST - mrFAST & mrsFAST are designed to map short reads generated with the Illumina platform to...3288 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole genome sequencing data” Input: depth file generated by DFExtract and a config fil...2955 days ago
- ...ercontent.com/santhilalsubhash/1e7cca357e52a181dc25/raw/cfb803e07900a2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation table format. It generated two files1) Transcript wise c...
2152 days ago
- ...ntire genome for Escherichia coli 536. FASTQ Format: text format for storing raw sequence data along with quality scores for each base; usually generated by sequencing machines. geno...
2915 days ago
Genome Assembly Tools and Software - PART1 !!
...to extend seed reads (or contigs generated by another assembler) into lo...fficient assemblers ever, it can generated contigs with highest accuracy...ilder v2.2 – Order Contigs generated by draft sequencing along a R...old assemblies, especially those generated by the de novo assembly of wh...2732 days ago
Awesome perl frameworks, libraries and software - PART 1
...i/showmethedesktop - Perl + VNC + WebSockets + HTML5 Canvas vmbrasseur/Perl_Companies - A list of companies which use Perl. Initially generated from postings to jobs.perl.or...2535 days ago
Run miniasm assembler on nanopore reads !
...p;awk '{if($1==$6){print}}' AONT.paf > AONTself.paf awk '$5=="-"' AONTself.paf | awk '{print $1}'| sort|uniq > invertedrepeat.list Generated a few palindrome and repeats...2376 days ago
